SP15 | nucleic acid extraction | SP15 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336316.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP15_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP15_R2_raw.fastq.gz | 71153 read | GLDS-276_GAmplicon_SP15_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP15_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP14 | nucleic acid extraction | SP14 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336317.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP14_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP14_R2_raw.fastq.gz | 87105 read | GLDS-276_GAmplicon_SP14_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP14_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP13 | nucleic acid extraction | SP13 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336318.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP13_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP13_R2_raw.fastq.gz | 73417 read | GLDS-276_GAmplicon_SP13_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP13_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP12 | nucleic acid extraction | SP12 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336319.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP12_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP12_R2_raw.fastq.gz | 61996 read | GLDS-276_GAmplicon_SP12_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP12_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP11 | nucleic acid extraction | SP11 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336320.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP11_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP11_R2_raw.fastq.gz | 75786 read | GLDS-276_GAmplicon_SP11_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP11_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP10 | nucleic acid extraction | SP10 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336321.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP10_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP10_R2_raw.fastq.gz | 63679 read | GLDS-276_GAmplicon_SP10_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP10_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP9 | nucleic acid extraction | SP9 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336322.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP9_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP9_R2_raw.fastq.gz | 35489 read | GLDS-276_GAmplicon_SP9_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP9_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP8 | nucleic acid extraction | SP8 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336323.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP8_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP8_R2_raw.fastq.gz | 105423 read | GLDS-276_GAmplicon_SP8_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP8_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP7 | nucleic acid extraction | SP7 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336324.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP7_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP7_R2_raw.fastq.gz | 77391 read | GLDS-276_GAmplicon_SP7_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP7_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP6 | nucleic acid extraction | SP6 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336325.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP6_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP6_R2_raw.fastq.gz | 88266 read | GLDS-276_GAmplicon_SP6_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP6_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP5 | nucleic acid extraction | SP5 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336326.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP5_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP5_R2_raw.fastq.gz | 90176 read | GLDS-276_GAmplicon_SP5_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP5_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP4 | nucleic acid extraction | SP4 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336327.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP4_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP4_R2_raw.fastq.gz | 95298 read | GLDS-276_GAmplicon_SP4_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP4_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP3 | nucleic acid extraction | SP3 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336328.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP3_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP3_R2_raw.fastq.gz | 91872 read | GLDS-276_GAmplicon_SP3_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP3_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP2 | nucleic acid extraction | SP2 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336329.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP2_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP2_R2_raw.fastq.gz | 47900 read | GLDS-276_GAmplicon_SP2_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP2_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |
SP1 | nucleic acid extraction | SP1 | library construction | 16S | AMPLICON | PCR | PAIRED | 515F-806R | nucleic acid sequencing | Illumina MiSeq | 151 base pair | Amplicon sequencing | GLDS-276_Amplicon_SRR5336330.fastq.gz | GeneLab amplicon-seq data processing protocol | GLDS-276_GAmplicon_README.txt | GLDS-276_GAmplicon_SP1_R1_raw.fastq.gz, GLDS-276_GAmplicon_SP1_R2_raw.fastq.gz | 76624 read | GLDS-276_GAmplicon_SP1_R1_filtered.fastq.gz, GLDS-276_GAmplicon_SP1_R2_filtered.fastq.gz, GLDS-276_GAmplicon_filtered-read-counts.tsv | GLDS-276_GAmplicon_raw_multiqc_data.zip, GLDS-276_GAmplicon_raw_multiqc_report.html.zip, GLDS-276_GAmplicon_filtered_multiqc_data.zip, GLDS-276_GAmplicon_filtered_multiqc_report.html.zip | GLDS-276_GAmplicon_ASVs.fasta, GLDS-276_GAmplicon_counts.tsv, GLDS-276_GAmplicon_read-count-tracking.tsv, GLDS-276_GAmplicon_taxonomy-and-counts.biom.zip, GLDS-276_GAmplicon_taxonomy-and-counts.tsv, GLDS-276_GAmplicon_taxonomy.tsv | GLDS-276_GAmplicon_processing_info.tar |